rs3130618
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_033177.4(GPANK1):c.122G>T(p.Arg41Leu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.175 in 1,613,854 control chromosomes in the GnomAD database, including 26,676 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in the same amino acid substitution has been previously reported as Likely benign in UniProt.
Frequency
Consequence
NM_033177.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
GPANK1 | NM_033177.4 | c.122G>T | p.Arg41Leu | missense_variant | 2/3 | ENST00000375896.9 | NP_149417.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.169 AC: 25650AN: 152040Hom.: 2376 Cov.: 32
GnomAD3 exomes AF: 0.145 AC: 36482AN: 251328Hom.: 2998 AF XY: 0.145 AC XY: 19704AN XY: 135846
GnomAD4 exome AF: 0.176 AC: 257446AN: 1461696Hom.: 24300 Cov.: 33 AF XY: 0.174 AC XY: 126331AN XY: 727164
GnomAD4 genome AF: 0.169 AC: 25650AN: 152158Hom.: 2376 Cov.: 32 AF XY: 0.164 AC XY: 12214AN XY: 74382
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at