rs35854821

chr1-189502601-TAAAAAAAAAAA-Tchr1-189502601-TAAAAAAAAAAA-TAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAAAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAAAAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAAAAAAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAAAAAAAAAAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAAAAAAAAAAAAAAAAchr1-189502601-TAAAAAAAAAAA-TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Variant summary

Our verdict is Uncertain significance. Variant got 0 ACMG points: 0P and 0B.

The XR_002958413.2(LOC105371657):n.483-65719_483-65709del variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: not found (cov: 31)
• Consequence: LOC105371657 XR_002958413.2 intron, non_coding_transcript
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: 0.337

Genes affected

LOC105371657 (HGNC:):

ACMG classification

Verdict is Uncertain_significance. Variant got 0 ACMG points.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	#exon/exons	MANE	UniProt
LOC105371657	XR_002958413.2	n.483-65719_483-65709del		intron_variant, non_coding_transcript_variant

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	#exon/exons	TSL	MANE	Appris	UniProt

Frequencies

GnomAD3 genomes Cov.: 31

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome Cov.: 31

Bravo AF: 0.00000378

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs35854821; hg19: chr1-189471731;