rs363327

Variant names:

• chr10-117231271-G-A
• rs363327

Your query was ambiguous. Multiple possible variants found:

• chr10-117231271-G-A
• chr10-117231271-G-C

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The variant allele was found at a frequency of 0.189 in 152,248 control chromosomes in the GnomAD database, including 4,884 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.19 (4884 hom., cov: 33)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: 0.955

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.87).
• BA1: GnomAd4 highest subpopulation (AFR) allele frequency at 95% confidence interval = 0.441 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.189 AC: 28740 AN: 152130 Hom.: 4860 Cov.: 33

Gnomad AFR AF: 0.446

Gnomad AMI AF: 0.0263

Gnomad AMR AF: 0.209

Gnomad ASJ AF: 0.0855

Gnomad EAS AF: 0.224

Gnomad SAS AF: 0.0700

Gnomad FIN AF: 0.0458

Gnomad MID AF: 0.133

Gnomad NFE AF: 0.0641

Gnomad OTH AF: 0.179

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.189 AC: 28807 AN: 152248 Hom.: 4884 Cov.: 33 AF XY: 0.186 AC XY: 13875 AN XY: 74432

Gnomad4 AFR AF: 0.446

Gnomad4 AMR AF: 0.208

Gnomad4 ASJ AF: 0.0855

Gnomad4 EAS AF: 0.224

Gnomad4 SAS AF: 0.0703

Gnomad4 FIN AF: 0.0458

Gnomad4 NFE AF: 0.0641

Gnomad4 OTH AF: 0.179

Alfa AF: 0.0892 Hom.: 763

Bravo AF: 0.220

Asia WGS AF: 0.171 AC: 594 AN: 3478

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.87
CADD	Benign	7.0
DANN	Benign	0.74

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs363327; hg19: chr10-118990782;