rs370244148
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4BP7
The NM_024494.3(WNT2B):c.205C>A(p.Arg69Arg) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000547 in 1,461,894 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_024494.3 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
WNT2B | NM_024494.3 | c.205C>A | p.Arg69Arg | synonymous_variant | 2/5 | ENST00000369684.5 | NP_078613.1 | |
WNT2B | NM_004185.4 | c.148C>A | p.Arg50Arg | synonymous_variant | 3/6 | NP_004176.2 | ||
WNT2B | NM_001291880.1 | c.-72C>A | 5_prime_UTR_variant | 2/5 | NP_001278809.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
WNT2B | ENST00000369684.5 | c.205C>A | p.Arg69Arg | synonymous_variant | 2/5 | 1 | NM_024494.3 | ENSP00000358698.4 | ||
WNT2B | ENST00000369686.9 | c.148C>A | p.Arg50Arg | synonymous_variant | 3/6 | 1 | ENSP00000358700.4 | |||
WNT2B | ENST00000256640 | c.-72C>A | 5_prime_UTR_variant | 2/5 | 2 | ENSP00000256640.5 | ||||
WNT2B | ENST00000478360.1 | n.145C>A | non_coding_transcript_exon_variant | 1/2 | 2 |
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD3 exomes AF: 0.0000159 AC: 4AN: 251468Hom.: 0 AF XY: 0.0000294 AC XY: 4AN XY: 135910
GnomAD4 exome AF: 0.00000547 AC: 8AN: 1461894Hom.: 0 Cov.: 31 AF XY: 0.0000110 AC XY: 8AN XY: 727248
GnomAD4 genome Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at