rs376233432
Variant summary
Our verdict is Benign. Variant got -8 ACMG points: 0P and 8B. BP4_StrongBS2
The NM_001128164.2(ATXN1):c.636G>T(p.Gln212His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000495 in 1,515,692 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 15/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Uncertain significance (★). Another variant affecting the same amino acid position, but resulting in a different missense (i.e. Q212P) has been classified as Uncertain significance.
Frequency
Consequence
NM_001128164.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -8 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
ATXN1 | NM_001128164.2 | c.636G>T | p.Gln212His | missense_variant | 7/8 | ENST00000436367.6 | |
ATXN1 | NM_000332.4 | c.636G>T | p.Gln212His | missense_variant | 8/9 | ||
ATXN1 | NM_001357857.2 | c.*49G>T | 3_prime_UTR_variant | 8/9 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ATXN1 | ENST00000436367.6 | c.636G>T | p.Gln212His | missense_variant | 7/8 | 1 | NM_001128164.2 | P1 | |
ATXN1 | ENST00000244769.8 | c.636G>T | p.Gln212His | missense_variant | 8/9 | 1 | P1 | ||
ATXN1 | ENST00000642969.1 | downstream_gene_variant |
Frequencies
GnomAD3 genomes ? AF: 0.0000920 AC: 11AN: 119624Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000631 AC: 9AN: 142684Hom.: 0 AF XY: 0.0000630 AC XY: 5AN XY: 79412
GnomAD4 exome AF: 0.0000458 AC: 64AN: 1395978Hom.: 0 Cov.: 120 AF XY: 0.0000403 AC XY: 28AN XY: 694028
GnomAD4 genome ? AF: 0.0000919 AC: 11AN: 119714Hom.: 0 Cov.: 32 AF XY: 0.000103 AC XY: 6AN XY: 58180
ClinVar
Submissions by phenotype
not specified Uncertain:1
Uncertain significance, criteria provided, single submitter | clinical testing | Genetic Services Laboratory, University of Chicago | Apr 04, 2014 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at