rs3765620
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6_ModerateBA1
The NM_002424.3(MMP8):c.95C>T(p.Thr32Ile) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.57 in 1,586,530 control chromosomes in the GnomAD database, including 261,255 homozygotes. In-silico tool predicts a benign outcome for this variant. 14/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★). Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin UniProt.
Frequency
Consequence
NM_002424.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
MMP8 | NM_002424.3 | c.95C>T | p.Thr32Ile | missense_variant | 1/10 | ENST00000236826.8 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
MMP8 | ENST00000236826.8 | c.95C>T | p.Thr32Ile | missense_variant | 1/10 | 1 | NM_002424.3 | P1 |
Frequencies
GnomAD3 genomes AF: 0.626 AC: 95189AN: 151996Hom.: 30368 Cov.: 33
GnomAD3 exomes AF: 0.592 AC: 144728AN: 244278Hom.: 43548 AF XY: 0.591 AC XY: 78046AN XY: 132118
GnomAD4 exome AF: 0.564 AC: 809126AN: 1434416Hom.: 230866 Cov.: 31 AF XY: 0.565 AC XY: 402936AN XY: 712980
GnomAD4 genome AF: 0.626 AC: 95245AN: 152114Hom.: 30389 Cov.: 33 AF XY: 0.628 AC XY: 46710AN XY: 74378
ClinVar
Submissions by phenotype
not specified Benign:1
Benign, criteria provided, single submitter | clinical testing | Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine | Mar 28, 2016 | Variant identified in a genome or exome case(s) and assessed due to predicted null impact of the variant or pathogenic assertions in the literature or databases. Disclaimer: This variant has not undergone full assessment. The following are preliminary notes: Frequency - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at