rs3811444
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_015431.4(TRIM58):c.1121C>T(p.Thr374Met) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.321 in 1,613,926 control chromosomes in the GnomAD database, including 86,681 homozygotes. In-silico tool predicts a benign outcome for this variant. 12/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin UniProt.
Frequency
Consequence
NM_015431.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
TRIM58 | NM_015431.4 | c.1121C>T | p.Thr374Met | missense_variant | 6/6 | ENST00000366481.4 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
TRIM58 | ENST00000366481.4 | c.1121C>T | p.Thr374Met | missense_variant | 6/6 | 1 | NM_015431.4 | P1 |
Frequencies
GnomAD3 genomes AF: 0.266 AC: 40478AN: 151960Hom.: 6489 Cov.: 32
GnomAD3 exomes AF: 0.311 AC: 78137AN: 251394Hom.: 12944 AF XY: 0.319 AC XY: 43401AN XY: 135870
GnomAD4 exome AF: 0.326 AC: 477074AN: 1461848Hom.: 80197 Cov.: 71 AF XY: 0.329 AC XY: 238965AN XY: 727224
GnomAD4 genome AF: 0.266 AC: 40470AN: 152078Hom.: 6484 Cov.: 32 AF XY: 0.268 AC XY: 19916AN XY: 74326
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at