rs3828570
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The XR_007058672.1(LOC105374608):n.572+22G>A variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.61 in 152,066 control chromosomes in the GnomAD database, including 28,447 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
XR_007058672.1 intron, non_coding_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
LOC105374608 | XR_007058672.1 | n.572+22G>A | intron_variant, non_coding_transcript_variant | ||||
LOC105374608 | XR_007058673.1 | n.244+22G>A | intron_variant, non_coding_transcript_variant | ||||
LOC105374608 | XR_007058674.1 | n.244+22G>A | intron_variant, non_coding_transcript_variant | ||||
LOC105374608 | XR_007058675.1 | n.244+22G>A | intron_variant, non_coding_transcript_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|
Frequencies
GnomAD3 genomes ? AF: 0.609 AC: 92605AN: 151948Hom.: 28413 Cov.: 32
GnomAD4 genome ? AF: 0.610 AC: 92692AN: 152066Hom.: 28447 Cov.: 32 AF XY: 0.610 AC XY: 45317AN XY: 74332
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at