rs3837124
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The ENST00000359943.8(FAM3C):c.467+75del variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00031 in 754,660 control chromosomes in the GnomAD database, with no homozygous occurrence. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Genomes: 𝑓 0.000013 ( 0 hom., cov: 0)
Exomes 𝑓: 0.00038 ( 0 hom. )
Consequence
FAM3C
ENST00000359943.8 intron
ENST00000359943.8 intron
Scores
Not classified
Clinical Significance
Not reported in ClinVar
Conservation
PhyloP100: 0.455
Genes affected
FAM3C (HGNC:18664): (FAM3 metabolism regulating signaling molecule C) This gene is a member of the family with sequence similarity 3 (FAM3) family and encodes a secreted protein with a GG domain. A change in expression of this protein has been noted in pancreatic cancer-derived cells. [provided by RefSeq, Mar 2010]
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ACMG classification
Classification made for transcript
Verdict is Uncertain_significance. Variant got 2 ACMG points.
PM2
Very rare variant in population databases, with high coverage;
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
FAM3C | NM_014888.3 | c.467+75del | intron_variant | ENST00000359943.8 | NP_055703.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
FAM3C | ENST00000359943.8 | c.467+75del | intron_variant | 1 | NM_014888.3 | ENSP00000353025 | P1 |
Frequencies
GnomAD3 genomes AF: 0.0000133 AC: 2AN: 150760Hom.: 0 Cov.: 0
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GnomAD4 exome AF: 0.000384 AC: 232AN: 603792Hom.: 0 AF XY: 0.000365 AC XY: 119AN XY: 325718
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GnomAD4 genome AF: 0.0000133 AC: 2AN: 150868Hom.: 0 Cov.: 0 AF XY: 0.00 AC XY: 0AN XY: 73672
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Details are displayed if max score is > 0.2
Find out detailed SpliceAI scores and Pangolin per-transcript scores at