rs387907025
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_018238.4(AGK):āc.841C>Gā(p.Arg281Gly) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000248 in 1,613,308 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_018238.4 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
AGK | NM_018238.4 | c.841C>G | p.Arg281Gly | missense_variant | 12/16 | ENST00000649286.2 | NP_060708.1 | |
AGK | NM_001364948.3 | c.841C>G | p.Arg281Gly | missense_variant | 12/15 | NP_001351877.1 | ||
AGK | XM_011516397.4 | c.841C>G | p.Arg281Gly | missense_variant | 12/16 | XP_011514699.1 | ||
AGK | XM_024446835.2 | c.841C>G | p.Arg281Gly | missense_variant | 12/16 | XP_024302603.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
AGK | ENST00000649286.2 | c.841C>G | p.Arg281Gly | missense_variant | 12/16 | NM_018238.4 | ENSP00000497280 | P1 |
Frequencies
GnomAD3 genomes AF: 0.00000658 AC: 1AN: 152074Hom.: 0 Cov.: 32
GnomAD4 exome AF: 0.00000205 AC: 3AN: 1461234Hom.: 0 Cov.: 31 AF XY: 0.00000275 AC XY: 2AN XY: 726918
GnomAD4 genome AF: 0.00000658 AC: 1AN: 152074Hom.: 0 Cov.: 32 AF XY: 0.0000135 AC XY: 1AN XY: 74266
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at