rs3902920
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The ENST00000477054.6(GSDMB):n.1092A>T variant causes a non coding transcript exon change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000746 in 134,008 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000477054.6 non_coding_transcript_exon
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
GSDMB | ENST00000477054.6 | n.1092A>T | non_coding_transcript_exon_variant | 1/8 | 5 |
Frequencies
GnomAD3 genomes ? AF: 0.00000746 AC: 1AN: 134008Hom.: 0 Cov.: 26
GnomAD4 exome Cov.: 0
GnomAD4 genome ? AF: 0.00000746 AC: 1AN: 134008Hom.: 0 Cov.: 26 AF XY: 0.0000153 AC XY: 1AN XY: 65382
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at