rs41273820
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBA1
The NM_000322.5(PRPH2):c.829-48C>T variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.222 in 1,609,070 control chromosomes in the GnomAD database, including 40,807 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★★).
Frequency
Consequence
NM_000322.5 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.224 AC: 34061AN: 151872Hom.: 3871 Cov.: 31
GnomAD3 exomes AF: 0.214 AC: 52176AN: 244210Hom.: 5708 AF XY: 0.217 AC XY: 28721AN XY: 132126
GnomAD4 exome AF: 0.222 AC: 323778AN: 1457080Hom.: 36925 Cov.: 36 AF XY: 0.224 AC XY: 161980AN XY: 724734
GnomAD4 genome AF: 0.224 AC: 34094AN: 151990Hom.: 3882 Cov.: 31 AF XY: 0.221 AC XY: 16436AN XY: 74306
ClinVar
Submissions by phenotype
not specified Benign:2
Curator: Global Variome, with Curator vacancy. Submitter to LOVD: Julia Lopez. -
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not provided Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at