rs41310885
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_001376665.1(MINDY1):c.123A>T(p.Arg41Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0643 in 1,614,132 control chromosomes in the GnomAD database, including 3,848 homozygotes. In-silico tool predicts a benign outcome for this variant. 13/19 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001376665.1 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
MINDY1 | NM_001376665.1 | c.123A>T | p.Arg41Ser | missense_variant | 2/10 | ENST00000683666.2 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
MINDY1 | ENST00000683666.2 | c.123A>T | p.Arg41Ser | missense_variant | 2/10 | NM_001376665.1 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.0767 AC: 11668AN: 152122Hom.: 548 Cov.: 32
GnomAD3 exomes AF: 0.0515 AC: 12956AN: 251462Hom.: 434 AF XY: 0.0487 AC XY: 6622AN XY: 135908
GnomAD4 exome AF: 0.0630 AC: 92078AN: 1461892Hom.: 3298 Cov.: 31 AF XY: 0.0611 AC XY: 44453AN XY: 727246
GnomAD4 genome ? AF: 0.0767 AC: 11674AN: 152240Hom.: 550 Cov.: 32 AF XY: 0.0744 AC XY: 5540AN XY: 74460
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at