rs4418209
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The ENST00000650727.1(ENSG00000286215):n.3037-1028A>T variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000132 in 151,770 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000650727.1 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
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Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ENSG00000286215 | ENST00000650727.1 | n.3037-1028A>T | intron_variant | Intron 14 of 14 | ||||||
ENSG00000286215 | ENST00000651326.1 | n.2290-25959A>T | intron_variant | Intron 5 of 6 | ||||||
ENSG00000286215 | ENST00000652383.1 | n.630+33110A>T | intron_variant | Intron 3 of 4 | ||||||
ENSG00000286215 | ENST00000652545.1 | n.3347-1028A>T | intron_variant | Intron 15 of 15 |
Frequencies
GnomAD3 genomes AF: 0.0000132 AC: 2AN: 151770Hom.: 0 Cov.: 31
GnomAD4 genome AF: 0.0000132 AC: 2AN: 151770Hom.: 0 Cov.: 31 AF XY: 0.0000270 AC XY: 2AN XY: 74102
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at