rs45574833
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6_ModerateBS1BS2
The NM_000715.4(C4BPA):c.719G>A(p.Arg240His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0137 in 1,605,946 control chromosomes in the GnomAD database, including 307 homozygotes. In-silico tool predicts a benign outcome for this variant. 15/20 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★). Another nucleotide change resulting in same amino acid change has been previously reported as Likely benignin UniProt.
Frequency
Consequence
NM_000715.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
C4BPA | NM_000715.4 | c.719G>A | p.Arg240His | missense_variant | 7/12 | ENST00000367070.8 | |
C4BPA | XM_005273251.3 | c.719G>A | p.Arg240His | missense_variant | 7/12 | ||
C4BPA | XM_005273252.5 | c.719G>A | p.Arg240His | missense_variant | 7/12 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
C4BPA | ENST00000367070.8 | c.719G>A | p.Arg240His | missense_variant | 7/12 | 1 | NM_000715.4 | P1 |
Frequencies
GnomAD3 genomes AF: 0.0134 AC: 2035AN: 151884Hom.: 38 Cov.: 32
GnomAD3 exomes AF: 0.0143 AC: 3522AN: 247038Hom.: 55 AF XY: 0.0144 AC XY: 1922AN XY: 133504
GnomAD4 exome AF: 0.0138 AC: 20034AN: 1453944Hom.: 269 Cov.: 29 AF XY: 0.0138 AC XY: 9973AN XY: 723220
GnomAD4 genome AF: 0.0134 AC: 2035AN: 152002Hom.: 38 Cov.: 32 AF XY: 0.0148 AC XY: 1097AN XY: 74280
ClinVar
Submissions by phenotype
not provided Benign:1
Benign, criteria provided, single submitter | clinical testing | GeneDx | Jun 09, 2021 | This variant is associated with the following publications: (PMID: 18424762) - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at