rs4711690
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The NM_001166424.2(PGC):āc.723G>Cā(p.Gln241His) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.162 in 1,525,826 control chromosomes in the GnomAD database, including 21,628 homozygotes. In-silico tool predicts a benign outcome for this variant. 12/14 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_001166424.2 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
PGC | ENST00000373025.7 | c.648-590G>C | intron_variant | Intron 5 of 8 | 1 | NM_002630.4 | ENSP00000362116.3 | |||
PGC | ENST00000425343.6 | c.723G>C | p.Gln241His | missense_variant | Exon 7 of 7 | 2 | ENSP00000405094.2 | |||
PGC | ENST00000356667.8 | c.411-590G>C | intron_variant | Intron 3 of 3 | 5 | ENSP00000349094.4 |
Frequencies
GnomAD3 genomes AF: 0.195 AC: 29668AN: 151978Hom.: 3217 Cov.: 32
GnomAD3 exomes AF: 0.192 AC: 26057AN: 135412Hom.: 2788 AF XY: 0.185 AC XY: 13405AN XY: 72304
GnomAD4 exome AF: 0.158 AC: 216833AN: 1373730Hom.: 18408 Cov.: 33 AF XY: 0.157 AC XY: 106027AN XY: 676448
GnomAD4 genome AF: 0.195 AC: 29712AN: 152096Hom.: 3220 Cov.: 32 AF XY: 0.195 AC XY: 14519AN XY: 74360
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at