rs4826381
Variant summary
Our verdict is Likely benign. Variant got -4 ACMG points: 0P and 4B. BP4_Strong
The NM_001017931.3(PAGE3):āc.103A>Gā(p.Asn35Asp) variant causes a missense change involving the alteration of a non-conserved nucleotide. In-silico tool predicts a benign outcome for this variant. 12/17 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another nucleotide change resulting in the same amino acid substitution has been previously reported as Likely benign in UniProt.
Frequency
Consequence
NM_001017931.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -4 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
PAGE3 | NM_001017931.3 | c.103A>G | p.Asn35Asp | missense_variant | Exon 3 of 5 | ENST00000374951.6 | NP_001017931.3 | |
PAGE3 | NM_001171252.2 | c.103A>G | p.Asn35Asp | missense_variant | Exon 3 of 5 | NP_001164723.2 | ||
PAGE3 | NM_001303613.2 | c.103A>G | p.Asn35Asp | missense_variant | Exon 3 of 5 | NP_001290542.2 | ||
PAGE3 | XM_017029282.3 | c.103A>G | p.Asn35Asp | missense_variant | Exon 3 of 5 | XP_016884771.1 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.841 AC: 92285AN: 109678Hom.: 28891 Cov.: 22 AF XY: 0.847 AC XY: 27064AN XY: 31952
GnomAD3 exomes AF: 0.934 AC: 169359AN: 181367Hom.: 50724 AF XY: 0.944 AC XY: 62158AN XY: 65875
GnomAD4 exome Data not reliable, filtered out with message: InbreedingCoeff AF: 0.949 AC: 433792AN: 456869Hom.: 129890 Cov.: 0 AF XY: 0.951 AC XY: 162376AN XY: 170659
GnomAD4 genome Data not reliable, filtered out with message: InbreedingCoeff AF: 0.841 AC: 92312AN: 109735Hom.: 28884 Cov.: 22 AF XY: 0.847 AC XY: 27106AN XY: 32019
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at