rs4938369
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000504906.1(ENSG00000250699):n.342-896G>A variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0747 in 152,074 control chromosomes in the GnomAD database, including 601 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
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Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENST00000504906.1 | n.342-896G>A | intron_variant, non_coding_transcript_variant | 3 | ||||||
CEP164 | ENST00000525734.5 | c.-98+2676C>T | intron_variant | 2 |
Frequencies
GnomAD3 genomes AF: 0.0747 AC: 11347AN: 151956Hom.: 602 Cov.: 32
GnomAD4 genome AF: 0.0747 AC: 11354AN: 152074Hom.: 601 Cov.: 32 AF XY: 0.0789 AC XY: 5865AN XY: 74326
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at