rs4998902
Variant summary
Our verdict is Benign. Variant got -21 ACMG points: 0P and 21B. BP4_StrongBP6_Very_StrongBP7BS1BS2
The NM_000497.4(CYP11B1):c.1266C>T(p.Arg422=) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000269 in 1,614,238 control chromosomes in the GnomAD database, including 3 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★★). Synonymous variant affecting the same amino acid position (i.e. R422R) has been classified as Likely benign.
Frequency
Consequence
NM_000497.4 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -21 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
CYP11B1 | NM_000497.4 | c.1266C>T | p.Arg422= | synonymous_variant | 8/9 | ENST00000292427.10 | |
CYP11B1 | NM_001026213.1 | c.1200+145C>T | intron_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CYP11B1 | ENST00000292427.10 | c.1266C>T | p.Arg422= | synonymous_variant | 8/9 | 1 | NM_000497.4 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.00147 AC: 224AN: 152276Hom.: 0 Cov.: 33
GnomAD3 exomes AF: 0.000302 AC: 76AN: 251394Hom.: 0 AF XY: 0.000228 AC XY: 31AN XY: 135854
GnomAD4 exome AF: 0.000143 AC: 209AN: 1461844Hom.: 3 Cov.: 34 AF XY: 0.000127 AC XY: 92AN XY: 727216
GnomAD4 genome ? AF: 0.00148 AC: 225AN: 152394Hom.: 0 Cov.: 33 AF XY: 0.00160 AC XY: 119AN XY: 74522
ClinVar
Submissions by phenotype
not provided Benign:2
Likely benign, criteria provided, single submitter | clinical testing | Athena Diagnostics | Sep 12, 2018 | - - |
Benign, criteria provided, single submitter | clinical testing | Invitae | Jan 21, 2024 | - - |
Deficiency of steroid 11-beta-monooxygenase;C3838731:Glucocorticoid-remediable aldosteronism Benign:1
Likely benign, criteria provided, single submitter | clinical testing | Fulgent Genetics, Fulgent Genetics | Oct 08, 2021 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at