rs5046
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000412344.1(ENSG00000244137):n.381-3799C>T variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.12 in 152,210 control chromosomes in the GnomAD database, including 1,110 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
AGT | NM_001382817.3 | c.-30-3799C>T | intron_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENST00000412344.1 | n.381-3799C>T | intron_variant, non_coding_transcript_variant | 3 | ||||||
AGT | ENST00000681269.1 | c.-30-3799C>T | intron_variant | P1 | |||||
AGT | ENST00000679738.1 | upstream_gene_variant |
Frequencies
GnomAD3 genomes ? AF: 0.120 AC: 18196AN: 152092Hom.: 1107 Cov.: 32
GnomAD4 genome ? AF: 0.120 AC: 18206AN: 152210Hom.: 1110 Cov.: 32 AF XY: 0.122 AC XY: 9107AN XY: 74428
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at