rs515726134
Variant summary
Our verdict is Likely pathogenic. Variant got 7 ACMG points: 7P and 0B. PVS1_StrongPM2PP5
The NM_001195305.3(BBIP1):āc.173T>Gā(p.Leu58Ter) variant causes a stop gained change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.0000104 in 1,535,738 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. Variant has been reported in ClinVar as Pathogenic (no stars). Synonymous variant affecting the same amino acid position (i.e. L58L) has been classified as Likely benign.
Frequency
Consequence
NM_001195305.3 stop_gained
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_pathogenic. Variant got 7 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
BBIP1 | NM_001195305.3 | c.173T>G | p.Leu58Ter | stop_gained | 4/4 | ENST00000448814.7 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
BBIP1 | ENST00000448814.7 | c.173T>G | p.Leu58Ter | stop_gained | 4/4 | 1 | NM_001195305.3 |
Frequencies
GnomAD3 genomes AF: 0.0000131 AC: 2AN: 152166Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.00000715 AC: 1AN: 139808Hom.: 0 AF XY: 0.0000132 AC XY: 1AN XY: 75690
GnomAD4 exome AF: 0.0000101 AC: 14AN: 1383572Hom.: 0 Cov.: 30 AF XY: 0.00000879 AC XY: 6AN XY: 682736
GnomAD4 genome AF: 0.0000131 AC: 2AN: 152166Hom.: 0 Cov.: 32 AF XY: 0.00 AC XY: 0AN XY: 74336
ClinVar
Submissions by phenotype
Bardet-Biedl syndrome 18 Pathogenic:1
Pathogenic, no assertion criteria provided | literature only | OMIM | Feb 01, 2014 | - - |
Bardet-Biedl syndrome 1 Other:1
not provided, no classification provided | literature only | GeneReviews | - | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at