rs533259
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_021133.4(RNASEL):c.1905+1341T>G variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000286 in 349,816 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_021133.4 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
RNASEL | NM_021133.4 | c.1905+1341T>G | intron_variant | Intron 5 of 6 | ENST00000367559.7 | NP_066956.1 | ||
RNASEL | XM_047427096.1 | c.1955+74T>G | intron_variant | Intron 6 of 6 | XP_047283052.1 | |||
RNASEL | XM_047427106.1 | c.*70T>G | downstream_gene_variant | XP_047283062.1 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD4 exome AF: 0.00000286 AC: 1AN: 349816Hom.: 0 Cov.: 4 AF XY: 0.00 AC XY: 0AN XY: 195644
GnomAD4 genome Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at
Publications
No publications associated with this variant yet.