rs536158625
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The ENST00000371732.10(CARD9):c.185-4G>T variant causes a splice region, splice polypyrimidine tract, intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000332 in 1,203,072 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 2/3 splice prediction tools predict no significant impact on normal splicing. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000371732.10 splice_region, splice_polypyrimidine_tract, intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
CARD9 | NM_052813.5 | c.185-4G>T | splice_region_variant, splice_polypyrimidine_tract_variant, intron_variant | ENST00000371732.10 | NP_434700.2 | |||
CARD9 | NM_052814.4 | c.185-4G>T | splice_region_variant, splice_polypyrimidine_tract_variant, intron_variant | NP_434701.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
CARD9 | ENST00000371732.10 | c.185-4G>T | splice_region_variant, splice_polypyrimidine_tract_variant, intron_variant | 1 | NM_052813.5 | ENSP00000360797 | P1 |
Frequencies
GnomAD3 genomes Cov.: 33
GnomAD3 exomes AF: 0.0000162 AC: 3AN: 184856Hom.: 0 AF XY: 0.0000100 AC XY: 1AN XY: 99618
GnomAD4 exome AF: 0.00000332 AC: 4AN: 1203072Hom.: 0 Cov.: 36 AF XY: 0.00000169 AC XY: 1AN XY: 592014
GnomAD4 genome Cov.: 33
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at