rs542896699
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBS1BS2
The NM_017432.5(PTOV1):āc.116C>Gā(p.Ala39Gly) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00135 in 1,220,128 control chromosomes in the GnomAD database, including 15 homozygotes. In-silico tool predicts a benign outcome for this variant. 13/19 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_017432.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
PTOV1 | NM_001305105.2 | c.116C>G | p.Ala39Gly | missense_variant | Exon 1 of 13 | NP_001292034.1 | ||
PTOV1 | NM_001394010.1 | c.116C>G | p.Ala39Gly | missense_variant | Exon 1 of 12 | NP_001380939.1 | ||
PTOV1 | NM_017432.5 | c.116C>G | p.Ala39Gly | missense_variant | Exon 1 of 13 | NP_059128.2 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.00657 AC: 994AN: 151188Hom.: 9 Cov.: 32
GnomAD4 exome AF: 0.000610 AC: 652AN: 1068832Hom.: 7 Cov.: 31 AF XY: 0.000574 AC XY: 290AN XY: 505192
GnomAD4 genome AF: 0.00656 AC: 993AN: 151296Hom.: 8 Cov.: 32 AF XY: 0.00649 AC XY: 480AN XY: 73940
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at