rs545683519
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The NM_015512.5(DNAH1):c.7483C>A(p.Arg2495Ser) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000139 in 1,441,446 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 13/18 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. R2495C) has been classified as Uncertain significance.
Frequency
Consequence
NM_015512.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
DNAH1 | NM_015512.5 | c.7483C>A | p.Arg2495Ser | missense_variant | 48/78 | ENST00000420323.7 | |
DNAH1 | XM_017006129.2 | c.7552C>A | p.Arg2518Ser | missense_variant | 50/80 | ||
DNAH1 | XM_017006130.2 | c.7483C>A | p.Arg2495Ser | missense_variant | 49/79 | ||
DNAH1 | XM_017006131.2 | c.7552C>A | p.Arg2518Ser | missense_variant | 50/79 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
DNAH1 | ENST00000420323.7 | c.7483C>A | p.Arg2495Ser | missense_variant | 48/78 | 1 | NM_015512.5 | P1 | |
DNAH1 | ENST00000486752.5 | n.7744C>A | non_coding_transcript_exon_variant | 48/77 | 2 |
Frequencies
GnomAD3 genomes ? Cov.: 32
GnomAD3 exomes AF: 0.00000930 AC: 2AN: 214942Hom.: 0 AF XY: 0.00000861 AC XY: 1AN XY: 116166
GnomAD4 exome AF: 0.00000139 AC: 2AN: 1441446Hom.: 0 Cov.: 31 AF XY: 0.00000140 AC XY: 1AN XY: 715028
GnomAD4 genome ? Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at