rs546608637
Variant summary
Our verdict is Benign. Variant got -17 ACMG points: 0P and 17B. BP4_StrongBP6_Very_StrongBP7BS2
The NM_000435.3(NOTCH3):c.6504G>C(p.Val2168Val) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000507 in 1,539,674 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★★).
Frequency
Consequence
NM_000435.3 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -17 ACMG points.
Transcripts
RefSeq
Ensembl
Frequencies
GnomAD3 genomes AF: 0.000210 AC: 32AN: 152154Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.0000444 AC: 6AN: 135242Hom.: 0 AF XY: 0.0000540 AC XY: 4AN XY: 74100
GnomAD4 exome AF: 0.0000324 AC: 45AN: 1387402Hom.: 0 Cov.: 36 AF XY: 0.0000307 AC XY: 21AN XY: 685010
GnomAD4 genome AF: 0.000217 AC: 33AN: 152272Hom.: 0 Cov.: 32 AF XY: 0.000228 AC XY: 17AN XY: 74450
ClinVar
Submissions by phenotype
not specified Benign:1
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NOTCH3-related disorder Benign:1
This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
not provided Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at