rs55749223

Variant names:

• chrM-16188-C-A
• rs55749223
• unassigned_transcript_4820:c.-165G>T

Your query was ambiguous. Multiple possible variants found:

• chrM-16188-C-A
• chrM-16188-C-G
• chrM-16188-C-T

Variant summary

Our verdict is Likely benign. Variant got -4 ACMG points: 0P and 4B. BS2

No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Mitomap GenBank: 𝑓 0.0010 (AC: 61)
• Consequence: TRNP upstream_gene
• Clinical Significance: Not reported in ClinVar No linked disesase in Mitomap
• Conservation: PhyloP100: -4.89

Genes affected

TRNP (HGNC:7494): (mitochondrially encoded tRNA proline)

TRNT (HGNC:7499): (mitochondrially encoded tRNA threonine)

ACMG classification

Verdict is Likely_benign. Variant got -4 ACMG points.

• BS2: High AC in GnomadMitoHomoplasmic at 10

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt
TRNP	unassigned_transcript_4820	c.-165G>T		upstream_gene_variant
TRNT	unassigned_transcript_4819	c.*235C>A		downstream_gene_variant

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

We have no GnomAD4 genomes data on this position. Probably position not covered by the project.

Mitomap GenBank AF: 0.0010 AC: 61

Gnomad homoplasmic AF: 0.00018 AC: 10 AN: 56431

Gnomad heteroplasmic AF: 0.0 AC: 0 AN: 56431

Mitomap

No disease associated.

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs55749223; hg19: chrM-16190;