rs568515212
Variant summary
Our verdict is Uncertain significance. Variant got 0 ACMG points: 2P and 2B. PM2BP4_Moderate
The NM_020951.5(ZNF529):c.1148G>T(p.Arg383Leu) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000124 in 1,612,922 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. 12/20 in silico tools predict a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. R383H) has been classified as Uncertain significance.
Frequency
Consequence
NM_020951.5 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 0 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ZNF529 | ENST00000591340.6 | c.1148G>T | p.Arg383Leu | missense_variant | Exon 5 of 5 | 1 | NM_020951.5 | ENSP00000465578.1 | ||
ZNF529 | ENST00000334116.7 | c.833G>T | p.Arg278Leu | missense_variant | Exon 6 of 6 | 2 | ENSP00000334695.7 | |||
ZNF529 | ENST00000590656.1 | c.119G>T | p.Arg40Leu | missense_variant | Exon 1 of 3 | 3 | ENSP00000468594.1 | |||
ZNF529 | ENST00000452073.2 | c.205+148G>T | intron_variant | Intron 1 of 1 | 3 | ENSP00000465917.1 |
Frequencies
GnomAD3 genomes AF: 0.00000660 AC: 1AN: 151410Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.00000800 AC: 2AN: 249970Hom.: 0 AF XY: 0.00000738 AC XY: 1AN XY: 135538
GnomAD4 exome AF: 6.84e-7 AC: 1AN: 1461512Hom.: 0 Cov.: 34 AF XY: 0.00000138 AC XY: 1AN XY: 727034
GnomAD4 genome AF: 0.00000660 AC: 1AN: 151410Hom.: 0 Cov.: 32 AF XY: 0.00 AC XY: 0AN XY: 73910
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at