rs58264281
Variant summary
Our verdict is Likely benign. Variant got -2 ACMG points: 2P and 4B. PM2BP4_Strong
The ENST00000415300.6(AURKC):c.1+7C>A variant causes a splice region, intron change involving the alteration of a non-conserved nucleotide. The variant was absent in control chromosomes in GnomAD project. In-silico tool predicts a benign outcome for this variant. 2/2 splice prediction tools predict no significant impact on normal splicing. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000415300.6 splice_region, intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
AURKC | NM_001015878.2 | c.-128C>A | 5_prime_UTR_variant | 1/7 | ENST00000302804.12 | ||
AURKC | NM_003160.3 | c.-45+2C>A | splice_donor_variant | ||||
AURKC | XM_047439253.1 | c.-128C>A | 5_prime_UTR_variant | 1/5 | |||
AURKC | NM_001015879.2 | c.1+7C>A | splice_region_variant, intron_variant |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
AURKC | ENST00000302804.12 | c.-128C>A | 5_prime_UTR_variant | 1/7 | 1 | NM_001015878.2 | A2 | ||
AURKC | ENST00000415300.6 | c.1+7C>A | splice_region_variant, intron_variant | 1 | |||||
AURKC | ENST00000601799.5 | upstream_gene_variant | 3 |
Frequencies
GnomAD3 genomes ? Cov.: 29
GnomAD4 exome Cov.: 42
GnomAD4 genome ? Cov.: 29
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at