rs5911592
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000620443.2(GRIA3):c.696+2498C>T variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.194 in 110,932 control chromosomes in the GnomAD database, including 1,656 homozygotes. There are 6,009 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000620443.2 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
GRIA3 | NM_000828.5 | c.696+2498C>T | intron_variant | ENST00000622768.5 | NP_000819.4 | |||
GRIA3 | NM_007325.5 | c.696+2498C>T | intron_variant | ENST00000620443.2 | NP_015564.5 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
GRIA3 | ENST00000620443.2 | c.696+2498C>T | intron_variant | 1 | NM_007325.5 | ENSP00000478489 | P4 | |||
GRIA3 | ENST00000622768.5 | c.696+2498C>T | intron_variant | 5 | NM_000828.5 | ENSP00000481554 | A1 | |||
GRIA3 | ENST00000620581.4 | c.696+2498C>T | intron_variant, NMD_transcript_variant | 1 | ENSP00000481875 |
Frequencies
GnomAD3 genomes AF: 0.194 AC: 21486AN: 110882Hom.: 1657 Cov.: 22 AF XY: 0.181 AC XY: 5987AN XY: 33166
GnomAD4 genome AF: 0.194 AC: 21507AN: 110932Hom.: 1656 Cov.: 22 AF XY: 0.181 AC XY: 6009AN XY: 33226
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at