rs6075165

Variant names:

• chr20-17057618-G-A
• rs6075165

Your query was ambiguous. Multiple possible variants found:

• chr20-17057618-G-A
• chr20-17057618-G-T

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The variant allele was found at a frequency of 0.342 in 152,160 control chromosomes in the GnomAD database, including 11,107 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.34 (11107 hom., cov: 33)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: -2.35

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.91).
• BA1: GnomAd4 highest subpopulation (EAS) allele frequency at 95% confidence interval = 0.735 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.342 AC: 52056 AN: 152040 Hom.: 11104 Cov.: 33

Gnomad AFR AF: 0.0994

Gnomad AMI AF: 0.234

Gnomad AMR AF: 0.468

Gnomad ASJ AF: 0.417

Gnomad EAS AF: 0.754

Gnomad SAS AF: 0.517

Gnomad FIN AF: 0.464

Gnomad MID AF: 0.351

Gnomad NFE AF: 0.396

Gnomad OTH AF: 0.368

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.342 AC: 52069 AN: 152160 Hom.: 11107 Cov.: 33 AF XY: 0.352 AC XY: 26164 AN XY: 74374

Gnomad4 AFR AF: 0.0992

Gnomad4 AMR AF: 0.468

Gnomad4 ASJ AF: 0.417

Gnomad4 EAS AF: 0.755

Gnomad4 SAS AF: 0.516

Gnomad4 FIN AF: 0.464

Gnomad4 NFE AF: 0.396

Gnomad4 OTH AF: 0.368

Alfa AF: 0.285 Hom.: 1120

Bravo AF: 0.332

Asia WGS AF: 0.608 AC: 2112 AN: 3478

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.91
CADD	Benign	1.2
DANN	Benign	0.76

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs6075165; hg19: chr20-17038263;