rs61729450
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBS1BS2
The ENST00000420323.7(DNAH1):āc.569T>Cā(p.Ile190Thr) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00571 in 1,607,330 control chromosomes in the GnomAD database, including 71 homozygotes. In-silico tool predicts a benign outcome for this variant. 11/18 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (ā ā ).
Frequency
Consequence
ENST00000420323.7 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
DNAH1 | NM_015512.5 | c.569T>C | p.Ile190Thr | missense_variant | 4/78 | ENST00000420323.7 | NP_056327.4 | |
DNAH1 | XM_017006129.2 | c.569T>C | p.Ile190Thr | missense_variant | 5/80 | XP_016861618.1 | ||
DNAH1 | XM_017006130.2 | c.569T>C | p.Ile190Thr | missense_variant | 5/79 | XP_016861619.1 | ||
DNAH1 | XM_017006131.2 | c.569T>C | p.Ile190Thr | missense_variant | 5/79 | XP_016861620.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
DNAH1 | ENST00000420323.7 | c.569T>C | p.Ile190Thr | missense_variant | 4/78 | 1 | NM_015512.5 | ENSP00000401514 | P1 | |
DNAH1 | ENST00000486752.5 | n.830T>C | non_coding_transcript_exon_variant | 4/77 | 2 | |||||
DNAH1 | ENST00000497875.1 | n.734T>C | non_coding_transcript_exon_variant | 5/21 | 2 |
Frequencies
GnomAD3 genomes AF: 0.00394 AC: 600AN: 152120Hom.: 5 Cov.: 32
GnomAD3 exomes AF: 0.00600 AC: 1455AN: 242462Hom.: 10 AF XY: 0.00703 AC XY: 929AN XY: 132060
GnomAD4 exome AF: 0.00590 AC: 8580AN: 1455092Hom.: 66 Cov.: 31 AF XY: 0.00643 AC XY: 4655AN XY: 724066
GnomAD4 genome AF: 0.00393 AC: 599AN: 152238Hom.: 5 Cov.: 32 AF XY: 0.00407 AC XY: 303AN XY: 74438
ClinVar
Submissions by phenotype
not provided Benign:3
Likely benign, criteria provided, single submitter | clinical testing | ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories | Aug 25, 2023 | - - |
Likely benign, criteria provided, single submitter | clinical testing | GeneDx | Jul 09, 2018 | - - |
Likely benign, criteria provided, single submitter | not provided | Breakthrough Genomics, Breakthrough Genomics | - | - - |
Spermatogenic failure 18;C4539798:Ciliary dyskinesia, primary, 37 Benign:1
Benign, criteria provided, single submitter | clinical testing | Labcorp Genetics (formerly Invitae), Labcorp | Jan 29, 2024 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at