rs61735781
Variant summary
Our verdict is Benign. Variant got -20 ACMG points: 0P and 20B. BP4_StrongBP6_Very_StrongBS1BS2
The NM_021254.4(CFAP298):c.622G>A(p.Val208Met) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0059 in 1,614,212 control chromosomes in the GnomAD database, including 55 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★★). Synonymous variant affecting the same amino acid position (i.e. V208V) has been classified as Likely benign.
Frequency
Consequence
NM_021254.4 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -20 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
CFAP298 | NM_021254.4 | c.622G>A | p.Val208Met | missense_variant | 5/7 | ENST00000290155.8 | |
CFAP298-TCP10L | NR_146638.2 | n.756G>A | non_coding_transcript_exon_variant | 5/11 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CFAP298 | ENST00000290155.8 | c.622G>A | p.Val208Met | missense_variant | 5/7 | 1 | NM_021254.4 | P1 |
Frequencies
GnomAD3 genomes AF: 0.00436 AC: 664AN: 152244Hom.: 2 Cov.: 32
GnomAD3 exomes AF: 0.00422 AC: 1062AN: 251480Hom.: 6 AF XY: 0.00444 AC XY: 603AN XY: 135916
GnomAD4 exome AF: 0.00607 AC: 8867AN: 1461850Hom.: 53 Cov.: 32 AF XY: 0.00605 AC XY: 4402AN XY: 727234
GnomAD4 genome AF: 0.00436 AC: 664AN: 152362Hom.: 2 Cov.: 32 AF XY: 0.00432 AC XY: 322AN XY: 74506
ClinVar
Submissions by phenotype
not provided Benign:3
Likely benign, criteria provided, single submitter | clinical testing | ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories | Nov 01, 2023 | - - |
Benign, criteria provided, single submitter | clinical testing | Invitae | Jan 31, 2024 | - - |
Likely benign, criteria provided, single submitter | clinical testing | GeneDx | May 26, 2021 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at