rs61903295
Variant summary
Our verdict is Benign. Variant got -13 ACMG points: 0P and 13B. BP4_ModerateBP6_ModerateBP7BA1
The NM_014679.5(CEP57):c.798A>G(p.Pro266=) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0328 in 1,610,584 control chromosomes in the GnomAD database, including 1,024 homozygotes. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★). Synonymous variant affecting the same amino acid position (i.e. P266P) has been classified as Likely benign.
Frequency
Consequence
NM_014679.5 synonymous
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -13 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
CEP57 | NM_014679.5 | c.798A>G | p.Pro266= | synonymous_variant | 7/11 | ENST00000325542.10 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
CEP57 | ENST00000325542.10 | c.798A>G | p.Pro266= | synonymous_variant | 7/11 | 1 | NM_014679.5 |
Frequencies
GnomAD3 genomes ? AF: 0.0290 AC: 4411AN: 152118Hom.: 87 Cov.: 32
GnomAD3 exomes AF: 0.0324 AC: 8079AN: 249316Hom.: 160 AF XY: 0.0328 AC XY: 4425AN XY: 134896
GnomAD4 exome AF: 0.0332 AC: 48485AN: 1458348Hom.: 937 Cov.: 30 AF XY: 0.0333 AC XY: 24138AN XY: 725632
GnomAD4 genome ? AF: 0.0290 AC: 4414AN: 152236Hom.: 87 Cov.: 32 AF XY: 0.0293 AC XY: 2184AN XY: 74438
ClinVar
Submissions by phenotype
Mosaic variegated aneuploidy syndrome 2 Benign:1
Benign, criteria provided, single submitter | clinical testing | Invitae | Feb 01, 2024 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at