rs6556416
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000635333.1(ENSG00000249738):n.283-796A>C variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.755 in 151,874 control chromosomes in the GnomAD database, including 43,557 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
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Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENST00000635333.1 | n.283-796A>C | intron_variant, non_coding_transcript_variant | 5 | ||||||
ENST00000641150.1 | n.533-24787A>C | intron_variant, non_coding_transcript_variant | |||||||
ENST00000648969.1 | n.54-24787A>C | intron_variant, non_coding_transcript_variant |
Frequencies
GnomAD3 genomes ? AF: 0.754 AC: 114471AN: 151758Hom.: 43501 Cov.: 31
GnomAD4 genome ? AF: 0.754 AC: 114589AN: 151874Hom.: 43557 Cov.: 31 AF XY: 0.762 AC XY: 56585AN XY: 74210
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at