rs6588807
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000381241.9(ASMT):c.444-133A>C variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.351 in 863,660 control chromosomes in the GnomAD database, including 51,610 homozygotes. There are 159,183 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000381241.9 intron
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ASMT | NM_001171038.2 | c.444-133A>C | intron_variant | ENST00000381241.9 | NP_001164509.1 | |||
ASMT | NM_001171039.1 | c.444-133A>C | intron_variant | NP_001164510.1 | ||||
ASMT | NM_001416525.1 | c.444-133A>C | intron_variant | NP_001403454.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ASMT | ENST00000381241.9 | c.444-133A>C | intron_variant | 1 | NM_001171038.2 | ENSP00000370639 | ||||
ASMT | ENST00000381229.9 | c.444-133A>C | intron_variant | 1 | ENSP00000370627 | P1 | ||||
ASMT | ENST00000381233.8 | c.444-133A>C | intron_variant | 1 | ENSP00000370631 | |||||
ASMT | ENST00000509780.6 | n.288+1655A>C | intron_variant, non_coding_transcript_variant | 1 |
Frequencies
GnomAD3 genomes AF: 0.366 AC: 55384AN: 151488Hom.: 9706 Cov.: 32 AF XY: 0.365 AC XY: 26985AN XY: 73956
GnomAD4 exome AF: 0.348 AC: 247610AN: 712054Hom.: 41898 AF XY: 0.348 AC XY: 132152AN XY: 379782
GnomAD4 genome AF: 0.366 AC: 55427AN: 151606Hom.: 9712 Cov.: 32 AF XY: 0.365 AC XY: 27031AN XY: 74084
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at