rs6588810
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000381241.9(ASMT):c.787+935G>A variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.107 in 152,190 control chromosomes in the GnomAD database, including 1,262 homozygotes. There are 8,179 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000381241.9 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
ASMT | NM_001171038.2 | c.787+935G>A | intron_variant | ENST00000381241.9 | NP_001164509.1 | |||
ASMT | NM_001171039.1 | c.563-2213G>A | intron_variant | NP_001164510.1 | ||||
ASMT | NM_001416525.1 | c.703+935G>A | intron_variant | NP_001403454.1 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
ASMT | ENST00000381241.9 | c.787+935G>A | intron_variant | 1 | NM_001171038.2 | ENSP00000370639 | ||||
ASMT | ENST00000381229.9 | c.703+935G>A | intron_variant | 1 | ENSP00000370627 | P1 | ||||
ASMT | ENST00000381233.8 | c.563-2213G>A | intron_variant | 1 | ENSP00000370631 | |||||
ASMT | ENST00000509780.6 | n.289-2017G>A | intron_variant, non_coding_transcript_variant | 1 |
Frequencies
GnomAD3 genomes AF: 0.107 AC: 16340AN: 152072Hom.: 1264 Cov.: 32 AF XY: 0.110 AC XY: 8176AN XY: 74266
GnomAD4 genome AF: 0.107 AC: 16335AN: 152190Hom.: 1262 Cov.: 32 AF XY: 0.110 AC XY: 8179AN XY: 74394
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at