rs7035284

Variant names:

• chr9-21678974-A-G
• rs7035284

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The variant allele was found at a frequency of 0.33 in 151,970 control chromosomes in the GnomAD database, including 10,836 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.33 (10836 hom., cov: 33)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: 1.30

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.88).
• BA1: GnomAd4 highest subpopulation (AFR) allele frequency at 95% confidence interval = 0.612 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.330 AC: 50043 AN: 151852 Hom.: 10811 Cov.: 33

Gnomad AFR AF: 0.618

Gnomad AMI AF: 0.226

Gnomad AMR AF: 0.268

Gnomad ASJ AF: 0.240

Gnomad EAS AF: 0.403

Gnomad SAS AF: 0.267

Gnomad FIN AF: 0.246

Gnomad MID AF: 0.268

Gnomad NFE AF: 0.187

Gnomad OTH AF: 0.299

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.330 AC: 50119 AN: 151970 Hom.: 10836 Cov.: 33 AF XY: 0.329 AC XY: 24416 AN XY: 74278

Gnomad4 AFR AF: 0.618

Gnomad4 AMR AF: 0.268

Gnomad4 ASJ AF: 0.240

Gnomad4 EAS AF: 0.403

Gnomad4 SAS AF: 0.267

Gnomad4 FIN AF: 0.246

Gnomad4 NFE AF: 0.187

Gnomad4 OTH AF: 0.298

Alfa AF: 0.257 Hom.: 944

Bravo AF: 0.348

Asia WGS AF: 0.330 AC: 1128 AN: 3420

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.88
CADD	Benign	7.0
DANN	Benign	0.85

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs7035284; hg19: chr9-21678973;