rs7116614
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_002458.3(MUC5B):c.2493C>A(p.Cys831Ter) variant causes a stop gained change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000007 in 1,428,048 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Variant results in nonsense mediated mRNA decay.
Frequency
Consequence
NM_002458.3 stop_gained
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
MUC5B | NM_002458.3 | c.2493C>A | p.Cys831Ter | stop_gained | 21/49 | ENST00000529681.5 | NP_002449.2 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
MUC5B | ENST00000529681.5 | c.2493C>A | p.Cys831Ter | stop_gained | 21/49 | 5 | NM_002458.3 | ENSP00000436812 | P1 | |
MUC5B | ENST00000525715.5 | n.2551C>A | non_coding_transcript_exon_variant | 21/26 | 1 |
Frequencies
GnomAD3 genomes Cov.: 30
GnomAD4 exome AF: 7.00e-7 AC: 1AN: 1428048Hom.: 0 Cov.: 49 AF XY: 0.00 AC XY: 0AN XY: 707020
GnomAD4 genome Cov.: 30
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at