rs7177395

Variant names:

• chr15-22836312-G-A
• rs7177395

Variant summary

Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_Strong BA1

The variant allele was found at a frequency of 0.191 in 152,042 control chromosomes in the GnomAD database, including 3,007 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.

• Frequency: Genomes: 𝑓 0.19 (3007 hom., cov: 32)
• Consequence: Unknown
• Clinical Significance: Not reported in ClinVar
• Conservation: PhyloP100: -0.589

ACMG classification

Verdict is Benign. Variant got -12 ACMG points.

• BP4: Computational evidence support a benign effect (BayesDel_noAF=-0.87).
• BA1: GnomAd4 highest subpopulation (EAS) allele frequency at 95% confidence interval = 0.318 is higher than 0.05.

Transcripts

RefSeq

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	MANE	Protein	UniProt

Ensembl

Gene	Transcript	HGVSc	HGVSp	Effect	Exon rank	TSL	MANE	Protein	Appris	UniProt

Frequencies

GnomAD3 genomes AF: 0.191 AC: 29040 AN: 151922 Hom.: 2999 Cov.: 32

Gnomad AFR AF: 0.204

Gnomad AMI AF: 0.213

Gnomad AMR AF: 0.290

Gnomad ASJ AF: 0.193

Gnomad EAS AF: 0.330

Gnomad SAS AF: 0.180

Gnomad FIN AF: 0.158

Gnomad MID AF: 0.231

Gnomad NFE AF: 0.156

Gnomad OTH AF: 0.199

We have no GnomAD4 exomes data on this position. Probably position not covered by the project.

GnomAD4 genome AF: 0.191 AC: 29067 AN: 152042 Hom.: 3007 Cov.: 32 AF XY: 0.193 AC XY: 14342 AN XY: 74312

Gnomad4 AFR AF: 0.204

Gnomad4 AMR AF: 0.291

Gnomad4 ASJ AF: 0.193

Gnomad4 EAS AF: 0.331

Gnomad4 SAS AF: 0.180

Gnomad4 FIN AF: 0.158

Gnomad4 NFE AF: 0.156

Gnomad4 OTH AF: 0.199

Alfa AF: 0.187 Hom.: 1301

Bravo AF: 0.201

Asia WGS AF: 0.239 AC: 830 AN: 3478

ClinVar

Not reported in ClinVar

Computational scores

Source: dbNSFP v4.3

Name	Calibrated prediction	Score	Prediction
BayesDel_noAF	Benign	-0.87
CADD	Benign	0.91
DANN	Benign	0.53

Splicing

Find out detailed SpliceAI scores and Pangolin per-transcript scores at spliceailookup.broadinstitute.org

Publications

LitVar

Other links and lift over

dbSNP: rs7177395; hg19: chr15-23036756;