rs7205
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_ModerateBP6BP7BA1
The NM_001636.4(SLC25A6):c.408C>T(p.Phe136Phe) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.268 in 1,613,326 control chromosomes in the GnomAD database, including 61,161 homozygotes. There are 216,469 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (no stars).
Frequency
Consequence
NM_001636.4 synonymous
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
SLC25A6 | ENST00000381401.11 | c.408C>T | p.Phe136Phe | synonymous_variant | Exon 2 of 4 | 1 | NM_001636.4 | ENSP00000370808.5 | ||
SLC25A6 | ENST00000475167.6 | n.601C>T | non_coding_transcript_exon_variant | Exon 3 of 4 | 2 | |||||
SLC25A6 | ENST00000484026.6 | n.589C>T | non_coding_transcript_exon_variant | Exon 3 of 4 | 5 |
Frequencies
GnomAD3 genomes AF: 0.310 AC: 47061AN: 151972Hom.: 8151 Cov.: 32 AF XY: 0.307 AC XY: 22791AN XY: 74204
GnomAD3 exomes AF: 0.283 AC: 71050AN: 251204Hom.: 11092 AF XY: 0.286 AC XY: 38794AN XY: 135774
GnomAD4 exome AF: 0.263 AC: 384692AN: 1461234Hom.: 52996 Cov.: 70 AF XY: 0.266 AC XY: 193636AN XY: 726808
GnomAD4 genome AF: 0.310 AC: 47099AN: 152092Hom.: 8165 Cov.: 32 AF XY: 0.307 AC XY: 22833AN XY: 74334
ClinVar
Submissions by phenotype
SLC25A6-related disorder Benign:1
This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications). -
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at