rs73527702
Variant summary
Our verdict is Benign. Variant got -14 ACMG points: 0P and 14B. BP4_StrongBP6_ModerateBS1BS2
The NM_018051.5(DYNC2I1):c.604C>G(p.Leu202Val) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00196 in 1,594,884 control chromosomes in the GnomAD database, including 27 homozygotes. In-silico tool predicts a benign outcome for this variant. 12/19 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Benign (★). Synonymous variant affecting the same amino acid position (i.e. L202L) has been classified as Likely benign.
Frequency
Consequence
NM_018051.5 missense
Scores
Clinical Significance
Conservation
Genome browser will be placed here
ACMG classification
Verdict is Benign. Variant got -14 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
DYNC2I1 | NM_018051.5 | c.604C>G | p.Leu202Val | missense_variant | 5/25 | ENST00000407559.8 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
DYNC2I1 | ENST00000407559.8 | c.604C>G | p.Leu202Val | missense_variant | 5/25 | 1 | NM_018051.5 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.00919 AC: 1396AN: 151868Hom.: 10 Cov.: 32
GnomAD3 exomes AF: 0.00278 AC: 644AN: 231538Hom.: 7 AF XY: 0.00214 AC XY: 271AN XY: 126800
GnomAD4 exome AF: 0.00119 AC: 1724AN: 1442898Hom.: 17 Cov.: 30 AF XY: 0.00111 AC XY: 800AN XY: 718656
GnomAD4 genome ? AF: 0.00919 AC: 1396AN: 151986Hom.: 10 Cov.: 32 AF XY: 0.00890 AC XY: 661AN XY: 74272
ClinVar
Submissions by phenotype
Short-rib thoracic dysplasia 8 with or without polydactyly Benign:1
Benign, criteria provided, single submitter | clinical testing | Invitae | Jan 22, 2024 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at