rs7427
Variant summary
Our verdict is Likely benign. Variant got -3 ACMG points: 2P and 5B. PM2BP4_StrongBP7
The NM_012228.4(MSRB2):c.342C>A(p.Ser114=) variant causes a synonymous change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.000000684 in 1,461,864 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_012228.4 synonymous
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -3 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
MSRB2 | NM_012228.4 | c.342C>A | p.Ser114= | synonymous_variant | 4/5 | ENST00000376510.8 | |
MSRB2 | XM_011519426.3 | c.*174C>A | 3_prime_UTR_variant | 4/4 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
MSRB2 | ENST00000376510.8 | c.342C>A | p.Ser114= | synonymous_variant | 4/5 | 1 | NM_012228.4 | P1 | |
ENST00000655462.1 | n.116+14340G>T | intron_variant, non_coding_transcript_variant | |||||||
MSRB2 | ENST00000468633.1 | n.206C>A | non_coding_transcript_exon_variant | 1/2 | 2 | ||||
MSRB2 | ENST00000472663.1 | c.314C>A | p.Pro105Gln | missense_variant, NMD_transcript_variant | 4/5 | 5 |
Frequencies
GnomAD3 genomes ? Cov.: 31
GnomAD4 exome AF: 6.84e-7 AC: 1AN: 1461864Hom.: 0 Cov.: 38 AF XY: 0.00000138 AC XY: 1AN XY: 727228
GnomAD4 genome ? Cov.: 31
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at