rs749804804
Variant summary
Our verdict is Benign. Variant got -8 ACMG points: 0P and 8B. BP4_ModerateBP6_ModerateBS2
The NM_004006.3(DMD):āc.6545A>Gā(p.Gln2182Arg) variant causes a missense change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000232 in 1,209,121 control chromosomes in the GnomAD database, with no homozygous occurrence. There are 9 hemizygotes in GnomAD. In-silico tool predicts a benign outcome for this variant. 12/18 in silico tools predict a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (ā ).
Frequency
Consequence
NM_004006.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -8 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
DMD | NM_004006.3 | c.6545A>G | p.Gln2182Arg | missense_variant | 45/79 | ENST00000357033.9 | NP_003997.2 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Protein | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|---|
DMD | ENST00000357033.9 | c.6545A>G | p.Gln2182Arg | missense_variant | 45/79 | 1 | NM_004006.3 | ENSP00000354923.3 |
Frequencies
GnomAD3 genomes AF: 0.0000447 AC: 5AN: 111835Hom.: 0 Cov.: 23 AF XY: 0.0000880 AC XY: 3AN XY: 34087
GnomAD3 exomes AF: 0.0000328 AC: 6AN: 182735Hom.: 0 AF XY: 0.0000296 AC XY: 2AN XY: 67495
GnomAD4 exome AF: 0.0000210 AC: 23AN: 1097286Hom.: 0 Cov.: 31 AF XY: 0.0000165 AC XY: 6AN XY: 363098
GnomAD4 genome AF: 0.0000447 AC: 5AN: 111835Hom.: 0 Cov.: 23 AF XY: 0.0000880 AC XY: 3AN XY: 34087
ClinVar
Submissions by phenotype
Dystrophin deficiency Uncertain:1
Uncertain significance, no assertion criteria provided | clinical testing | Natera, Inc. | Sep 16, 2020 | - - |
Duchenne muscular dystrophy Benign:1
Likely benign, criteria provided, single submitter | clinical testing | Labcorp Genetics (formerly Invitae), Labcorp | Dec 02, 2023 | - - |
Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at