rs751227407
Variant summary
Our verdict is Uncertain significance. Variant got 2 ACMG points: 2P and 0B. PM2
The NM_019026.6(TMCO1):c.324-10_324-8delTTT variant causes a splice region, intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.0000684 in 1,345,488 control chromosomes in the GnomAD database, with no homozygous occurrence. 1/1 splice prediction tools predict no significant impact on normal splicing. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
NM_019026.6 splice_region, intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 2 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
TMCO1 | NM_019026.6 | c.324-10_324-8delTTT | splice_region_variant, intron_variant | Intron 5 of 6 | ENST00000367881.11 | NP_061899.3 | ||
TMCO1 | NM_001256164.1 | c.375-10_375-8delTTT | splice_region_variant, intron_variant | Intron 5 of 6 | NP_001243093.1 | |||
TMCO1 | NM_001256165.1 | c.288-10_288-8delTTT | splice_region_variant, intron_variant | Intron 5 of 6 | NP_001243094.1 | |||
TMCO1 | NR_045818.1 | n.418-10_418-8delTTT | splice_region_variant, intron_variant | Intron 5 of 6 |
Ensembl
Frequencies
GnomAD3 genomes AF: 0.0000105 AC: 1AN: 95686Hom.: 0 Cov.: 31
GnomAD4 exome AF: 0.0000728 AC: 91AN: 1249802Hom.: 0 AF XY: 0.0000527 AC XY: 33AN XY: 625696
GnomAD4 genome AF: 0.0000105 AC: 1AN: 95686Hom.: 0 Cov.: 31 AF XY: 0.0000218 AC XY: 1AN XY: 45864
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at