rs7561692
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000658738.1(LINC01121):n.708+18306A>G variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.174 in 152,130 control chromosomes in the GnomAD database, including 2,730 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Consequence
ENST00000658738.1 intron, non_coding_transcript
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
LINC01121 | ENST00000658738.1 | n.708+18306A>G | intron_variant, non_coding_transcript_variant | ||||||
LINC01121 | ENST00000427020.6 | n.704+18306A>G | intron_variant, non_coding_transcript_variant | 3 | |||||
LINC01121 | ENST00000430650.2 | n.716+18306A>G | intron_variant, non_coding_transcript_variant | 3 |
Frequencies
GnomAD3 genomes AF: 0.174 AC: 26398AN: 152010Hom.: 2720 Cov.: 32
GnomAD4 genome AF: 0.174 AC: 26431AN: 152130Hom.: 2730 Cov.: 32 AF XY: 0.174 AC XY: 12947AN XY: 74374
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at