rs76216585
Variant summary
Our verdict is Likely pathogenic. Variant got 8 ACMG points: 8P and 0B. PM1PM2PM5PP3_Moderate
The NM_172240.3(POC1B):c.317G>T(p.Arg106Leu) variant causes a missense change involving the alteration of a conserved nucleotide. The variant allele was found at a frequency of 0.00000501 in 1,597,630 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a pathogenic outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Another variant affecting the same amino acid position, but resulting in a different missense (i.e. R106P) has been classified as Pathogenic.
Frequency
Consequence
NM_172240.3 missense
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_pathogenic. Variant got 8 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
POC1B | NM_172240.3 | c.317G>T | p.Arg106Leu | missense_variant | 4/12 | ENST00000313546.8 | |
POC1B | NM_001199777.2 | c.191G>T | p.Arg64Leu | missense_variant | 3/11 | ||
POC1B | NR_037659.2 | n.297G>T | non_coding_transcript_exon_variant | 3/12 | |||
POC1B | NR_037660.2 | n.356G>T | non_coding_transcript_exon_variant | 2/10 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
POC1B | ENST00000313546.8 | c.317G>T | p.Arg106Leu | missense_variant | 4/12 | 1 | NM_172240.3 | P1 |
Frequencies
GnomAD3 genomes ? AF: 0.0000263 AC: 4AN: 152182Hom.: 0 Cov.: 32
GnomAD3 exomes AF: 0.00000854 AC: 2AN: 234288Hom.: 0 AF XY: 0.00 AC XY: 0AN XY: 126898
GnomAD4 exome AF: 0.00000277 AC: 4AN: 1445448Hom.: 0 Cov.: 30 AF XY: 0.00000139 AC XY: 1AN XY: 718744
GnomAD4 genome ? AF: 0.0000263 AC: 4AN: 152182Hom.: 0 Cov.: 32 AF XY: 0.0000135 AC XY: 1AN XY: 74326
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at