rs770081492
Variant summary
Our verdict is Likely benign. Variant got -4 ACMG points: 2P and 6B. PM2BP4_StrongBP6_Moderate
The NM_004341.5(CAD):c.83-19C>G variant causes a intron change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000279 in 1,431,956 control chromosomes in the GnomAD database, with no homozygous occurrence. In-silico tool predicts a benign outcome for this variant. Variant has been reported in ClinVar as Likely benign (★). There are indicators that this mutation may affect the branch point..
Frequency
Consequence
NM_004341.5 intron
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Likely_benign. Variant got -4 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | Exon rank | MANE | Protein | UniProt |
---|---|---|---|---|---|---|---|---|
CAD | NM_004341.5 | c.83-19C>G | intron_variant | Intron 1 of 43 | ENST00000264705.9 | NP_004332.2 | ||
CAD | NM_001306079.2 | c.83-19C>G | intron_variant | Intron 1 of 42 | NP_001293008.1 | |||
CAD | XM_047445803.1 | c.83-19C>G | intron_variant | Intron 1 of 44 | XP_047301759.1 | |||
CAD | XM_006712101.4 | c.83-19C>G | intron_variant | Intron 1 of 43 | XP_006712164.1 |
Ensembl
Frequencies
GnomAD3 genomes Cov.: 32
GnomAD3 exomes AF: 0.00000886 AC: 2AN: 225856Hom.: 0 AF XY: 0.0000165 AC XY: 2AN XY: 121262
GnomAD4 exome AF: 0.00000279 AC: 4AN: 1431956Hom.: 0 Cov.: 31 AF XY: 0.00000282 AC XY: 2AN XY: 709706
GnomAD4 genome Cov.: 32
ClinVar
Submissions by phenotype
not provided Benign:1
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Computational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at