rs770212030
Variant summary
Our verdict is Uncertain significance. Variant got 1 ACMG points: 2P and 1B. PM2BP3
The NM_014244.5(ADAMTS2):c.96_101del(p.Pro33_Pro34del) variant causes a inframe deletion change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.00000206 in 971,186 control chromosomes in the GnomAD database, with no homozygous occurrence. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar. Synonymous variant affecting the same amino acid position (i.e. P32P) has been classified as Likely benign.
Frequency
Consequence
NM_014244.5 inframe_deletion
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Uncertain_significance. Variant got 1 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
---|---|---|---|---|---|---|---|
ADAMTS2 | NM_014244.5 | c.96_101del | p.Pro33_Pro34del | inframe_deletion | 1/22 | ENST00000251582.12 | |
ADAMTS2 | NM_021599.4 | c.96_101del | p.Pro33_Pro34del | inframe_deletion | 1/11 |
Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ADAMTS2 | ENST00000251582.12 | c.96_101del | p.Pro33_Pro34del | inframe_deletion | 1/22 | 1 | NM_014244.5 | P2 | |
ADAMTS2 | ENST00000274609.5 | c.96_101del | p.Pro33_Pro34del | inframe_deletion | 1/11 | 1 | |||
ADAMTS2 | ENST00000518335.3 | c.96_101del | p.Pro33_Pro34del | inframe_deletion | 1/21 | 3 | A2 | ||
ADAMTS2 | ENST00000698889.1 | c.96_101del | p.Pro33_Pro34del | inframe_deletion, NMD_transcript_variant | 1/21 |
Frequencies
GnomAD3 genomes ? Cov.: 32
GnomAD4 exome AF: 0.00000206 AC: 2AN: 971186Hom.: 0 AF XY: 0.00000216 AC XY: 1AN XY: 463386
GnomAD4 genome ? Cov.: 32
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at