rs7719242
Variant summary
Our verdict is Benign. Variant got -12 ACMG points: 0P and 12B. BP4_StrongBA1
The ENST00000668084.2(ENSG00000286271):n.133+30100T>A variant causes a intron, non coding transcript change involving the alteration of a non-conserved nucleotide. The variant allele was found at a frequency of 0.228 in 152,142 control chromosomes in the GnomAD database, including 4,371 homozygotes. In-silico tool predicts a benign outcome for this variant. No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar.
Frequency
Scores
Clinical Significance
Conservation
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ACMG classification
Verdict is Benign. Variant got -12 ACMG points.
Transcripts
RefSeq
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | MANE | UniProt |
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Ensembl
Gene | Transcript | HGVSc | HGVSp | Effect | #exon/exons | TSL | MANE | Appris | UniProt |
---|---|---|---|---|---|---|---|---|---|
ENST00000668084.2 | n.133+30100T>A | intron_variant, non_coding_transcript_variant | |||||||
SELENOP | ENST00000514218.5 | c.-13-35653A>T | intron_variant | 5 | |||||
ENST00000651306.1 | n.377+26668T>A | intron_variant, non_coding_transcript_variant | |||||||
ENST00000653383.1 | n.273+30100T>A | intron_variant, non_coding_transcript_variant |
Frequencies
GnomAD3 genomes ? AF: 0.228 AC: 34686AN: 152024Hom.: 4360 Cov.: 32
GnomAD4 genome ? AF: 0.228 AC: 34725AN: 152142Hom.: 4371 Cov.: 32 AF XY: 0.231 AC XY: 17181AN XY: 74368
ClinVar
Not reported inComputational scores
Source:
Splicing
Find out detailed SpliceAI scores and Pangolin per-transcript scores at